PF00189


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00189, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00189
Description Ribosomal protein S3, C-terminal domain

Occurence in the database

PF00189 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2393 FBDBKF_19215 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S1
1 group_2393 EHELCC_18960 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S2
2 group_2393 NLDBIP_18975 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S4
3 group_2393 LHKJJB_18830 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S3
4 group_2393 HKOGLL_18565 19337 20038 -1 rpsC 30S ribosomal protein S3 Morganella morganii S5
5 group_2393 F4V73_RS18950 10301 11002 1 rpsC 30S ribosomal protein S3 Morganella psychrotolerans
6 group_2393 PMI_RS16180 3585784 3586485 1 rpsC 30S ribosomal protein S3 Proteus mirabilis HI4320