PF00185


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00185, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00185
Description Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain

Occurence in the database

PF00185 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2766 FBDBKF_07770 74264 75451 -1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S1
1 group_1425 FBDBKF_08810 141480 142415 -1 pyrB aspartate carbamoyltransferase Morganella morganii S1
2 group_1426 FBDBKF_08815 142682 143695 -1 argF ornithine carbamoyltransferase Morganella morganii S1
3 group_1426 EHELCC_12710 20030 21043 1 argF ornithine carbamoyltransferase Morganella morganii S2
4 group_1425 EHELCC_12715 21310 22245 1 pyrB aspartate carbamoyltransferase Morganella morganii S2
5 group_2766 EHELCC_13600 48458 49645 -1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S2
6 group_1426 NLDBIP_13050 20030 21043 1 argF ornithine carbamoyltransferase Morganella morganii S4
7 group_1425 NLDBIP_13055 21310 22245 1 pyrB aspartate carbamoyltransferase Morganella morganii S4
8 group_2766 NLDBIP_14045 69333 70520 -1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S4
9 group_2766 LHKJJB_08805 89229 90416 1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S3
10 group_1425 LHKJJB_13500 140198 141133 -1 pyrB aspartate carbamoyltransferase Morganella morganii S3
11 group_1426 LHKJJB_13505 141400 142413 -1 argF ornithine carbamoyltransferase Morganella morganii S3
12 group_2766 HKOGLL_08355 89229 90416 1 ygeW knotted carbamoyltransferase YgeW Morganella morganii S5
13 group_1426 HKOGLL_11525 20030 21043 1 argF ornithine carbamoyltransferase Morganella morganii S5
14 group_1425 HKOGLL_11530 21310 22245 1 pyrB aspartate carbamoyltransferase Morganella morganii S5
15 group_1425 F4V73_RS10030 112047 112982 -1 pyrB aspartate carbamoyltransferase Morganella psychrotolerans
16 group_1426 F4V73_RS10035 113268 114281 -1 argF ornithine carbamoyltransferase Morganella psychrotolerans
17 group_2766 F4V73_RS13275 282599 283786 1 ygeW knotted carbamoyltransferase YgeW Morganella psychrotolerans
18 group_1425 PMI_RS17220 3781987 3782922 -1 pyrB aspartate carbamoyltransferase Proteus mirabilis HI4320
19 group_1426 PMI_RS17230 3783274 3784278 -1 argF ornithine carbamoyltransferase Proteus mirabilis HI4320