PF00181


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00181, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00181
Description Ribosomal Proteins L2, RNA binding domain

Occurence in the database

PF00181 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2396 FBDBKF_19230 20695 21519 -1 rplB 50S ribosomal protein L2 Morganella morganii S1
1 group_2396 EHELCC_18975 20695 21519 -1 rplB 50S ribosomal protein L2 Morganella morganii S2
2 group_2396 NLDBIP_18990 20695 21519 -1 rplB 50S ribosomal protein L2 Morganella morganii S4
3 group_2396 LHKJJB_18845 20695 21519 -1 rplB 50S ribosomal protein L2 Morganella morganii S3
4 group_2396 HKOGLL_18580 20695 21519 -1 rplB 50S ribosomal protein L2 Morganella morganii S5
5 group_2396 F4V73_RS18935 8819 9643 1 rplB 50S ribosomal protein L2 Morganella psychrotolerans
6 group_2396 PMI_RS16165 3584302 3585126 1 rplB 50S ribosomal protein L2 Proteus mirabilis HI4320