PF00177


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00177, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00177
Description Ribosomal protein S7p/S5e

Occurence in the database

PF00177 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1683 FBDBKF_11745 2427 2897 -1 rpsG 30S ribosomal protein S7 Morganella morganii S1
1 group_1683 EHELCC_14560 131808 132278 1 rpsG 30S ribosomal protein S7 Morganella morganii S2
2 group_1683 NLDBIP_15660 135745 136215 1 rpsG 30S ribosomal protein S7 Morganella morganii S4
3 group_1683 LHKJJB_14955 2427 2897 -1 rpsG 30S ribosomal protein S7 Morganella morganii S3
4 group_1683 HKOGLL_19335 10454 10924 1 rpsG 30S ribosomal protein S7 Morganella morganii S5
5 group_1683 F4V73_RS14915 215371 215841 1 rpsG 30S ribosomal protein S7 Morganella psychrotolerans
6 group_1683 PMI_RS13800 3069378 3069848 -1 rpsG 30S ribosomal protein S7 Proteus mirabilis HI4320