PF00146


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00146, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00146
Description NADH dehydrogenase

Occurence in the database

PF00146 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_796 FBDBKF_03735 149883 150833 -1 hyfC Formate hydrogenlyase subunit HyfC Morganella morganii S1
1 group_1893 FBDBKF_14135 20964 21941 -1 nuoH NADH-quinone oxidoreductase subunit NuoH Morganella morganii S1
2 group_796 EHELCC_06800 96270 97220 1 hyfC Formate hydrogenlyase subunit HyfC Morganella morganii S2
3 group_1893 EHELCC_08145 95044 96021 1 nuoH NADH-quinone oxidoreductase subunit NuoH Morganella morganii S2
4 group_796 NLDBIP_07125 96143 97093 1 hyfC Formate hydrogenlyase subunit HyfC Morganella morganii S4
5 group_1893 NLDBIP_08470 95044 96021 1 nuoH NADH-quinone oxidoreductase subunit NuoH Morganella morganii S4
6 group_1893 LHKJJB_05795 161138 162115 -1 nuoH NADH-quinone oxidoreductase subunit NuoH Morganella morganii S3
7 group_796 LHKJJB_06660 59889 60839 1 hyfC Formate hydrogenlyase subunit HyfC Morganella morganii S3
8 group_796 HKOGLL_04270 172548 173498 -1 hyfC Formate hydrogenlyase subunit HyfC Morganella morganii S5
9 group_1893 HKOGLL_05120 79635 80612 1 nuoH NADH-quinone oxidoreductase subunit NuoH Morganella morganii S5
10 group_1893 F4V73_RS02800 592424 593401 1 nuoH NADH-quinone oxidoreductase subunit NuoH Morganella psychrotolerans
11 group_796 F4V73_RS11135 366605 367555 1 respiratory chain complex I subunit 1 family protein Morganella psychrotolerans
12 group_1893 PMI_RS08615 1879952 1880929 -1 nuoH NADH-quinone oxidoreductase subunit NuoH Proteus mirabilis HI4320
13 group_796 PMI_RS12490 2769222 2770172 -1 respiratory chain complex I subunit 1 family protein Proteus mirabilis HI4320