PF00118


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00118, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00118
Description TCP-1/cpn60 chaperonin family

Occurence in the database

PF00118 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_805 FBDBKF_03800 164047 165693 -1 groL chaperonin GroEL Morganella morganii S1
1 group_805 EHELCC_06735 81410 83056 1 groL chaperonin GroEL Morganella morganii S2
2 group_805 NLDBIP_07060 81283 82929 1 groL chaperonin GroEL Morganella morganii S4
3 group_805 LHKJJB_06595 45029 46675 1 groL chaperonin GroEL Morganella morganii S3
4 group_805 HKOGLL_04335 186712 188358 -1 groL chaperonin GroEL Morganella morganii S5
5 group_805 F4V73_RS11070 350741 352387 1 groL chaperonin GroEL Morganella psychrotolerans
6 group_805 PMI_RS12575 2786681 2788327 -1 groL chaperonin GroEL Proteus mirabilis HI4320