PF00042


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00042, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00042
Description Globin

Occurence in the database

PF00042 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_532 FBDBKF_01165 217159 218340 1 hmpA NO-inducible flavohemoprotein Morganella morganii S1
1 group_532 EHELCC_00380 90528 91709 -1 hmpA NO-inducible flavohemoprotein Morganella morganii S2
2 group_532 NLDBIP_03080 588427 589608 1 hmpA NO-inducible flavohemoprotein Morganella morganii S4
3 group_532 LHKJJB_04595 195668 196849 1 hmpA NO-inducible flavohemoprotein Morganella morganii S3
4 group_532 HKOGLL_02450 90733 91914 -1 hmpA NO-inducible flavohemoprotein Morganella morganii S5
5 group_532 F4V73_RS07240 1506216 1507397 1 hmpA NO-inducible flavohemoprotein Morganella psychrotolerans
6 group_532 PMI_RS09220 2009521 2010711 1 hmpA NO-inducible flavohemoprotein Proteus mirabilis HI4320