Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00012, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF00012 |
---|---|
Description | Hsp70 protein |
Occurence in the database
PF00012 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_522 | FBDBKF_01115 | 207503 | 209350 | -1 | hscA | Fe-S protein assembly chaperone HscA | Morganella morganii S1 |
1 | group_677 | FBDBKF_02555 | 208848 | 210200 | -1 | yegD | molecular chaperone | Morganella morganii S1 |
2 | group_1135 | FBDBKF_06495 | 136899 | 138821 | -1 | dnaK | molecular chaperone DnaK | Morganella morganii S1 |
3 | group_522 | EHELCC_00430 | 99518 | 101365 | 1 | hscA | Fe-S protein assembly chaperone HscA | Morganella morganii S2 |
4 | group_677 | EHELCC_03025 | 596668 | 598020 | -1 | yegD | molecular chaperone | Morganella morganii S2 |
5 | group_1135 | EHELCC_09540 | 137471 | 139393 | -1 | dnaK | molecular chaperone DnaK | Morganella morganii S2 |
6 | group_677 | NLDBIP_00435 | 82116 | 83468 | 1 | yegD | molecular chaperone | Morganella morganii S4 |
7 | group_522 | NLDBIP_03030 | 578771 | 580618 | -1 | hscA | Fe-S protein assembly chaperone HscA | Morganella morganii S4 |
8 | group_1135 | NLDBIP_09920 | 137471 | 139393 | -1 | dnaK | molecular chaperone DnaK | Morganella morganii S4 |
9 | group_677 | LHKJJB_01600 | 309217 | 310569 | -1 | yegD | molecular chaperone | Morganella morganii S3 |
10 | group_522 | LHKJJB_04545 | 186012 | 187859 | -1 | hscA | Fe-S protein assembly chaperone HscA | Morganella morganii S3 |
11 | group_1135 | LHKJJB_07835 | 77845 | 79767 | 1 | dnaK | molecular chaperone DnaK | Morganella morganii S3 |
12 | group_677 | HKOGLL_01640 | 314728 | 316080 | -1 | yegD | molecular chaperone | Morganella morganii S5 |
13 | group_522 | HKOGLL_02500 | 99723 | 101570 | 1 | hscA | Fe-S protein assembly chaperone HscA | Morganella morganii S5 |
14 | group_1135 | HKOGLL_07385 | 77845 | 79767 | 1 | dnaK | molecular chaperone DnaK | Morganella morganii S5 |
15 | group_677 | F4V73_RS04980 | 1060806 | 1062158 | -1 | yegD | molecular chaperone | Morganella psychrotolerans |
16 | group_522 | F4V73_RS07185 | 1495462 | 1497324 | -1 | hscA | Fe-S protein assembly chaperone HscA | Morganella psychrotolerans |
17 | group_1135 | F4V73_RS15440 | 74930 | 76852 | 1 | dnaK | molecular chaperone DnaK | Morganella psychrotolerans |
18 | group_1135 | PMI_RS00045 | 18101 | 20026 | 1 | dnaK | molecular chaperone DnaK | Proteus mirabilis HI4320 |
19 | group_677 | PMI_RS06125 | 1343319 | 1344671 | 1 | yegD | molecular chaperone | Proteus mirabilis HI4320 |
20 | group_522 | PMI_RS09160 | 1997584 | 1999434 | -1 | hscA | Fe-S protein assembly chaperone HscA | Proteus mirabilis HI4320 |