Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Kegg Ortholog K00891
Protein list: lists the 14 occurences of the Kegg Ortholog within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Kegg Ortholog of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Ortholog has been clustered.
Orthogroups are shown in red if they are annotated with that particular Kegg Ortholog in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Kegg Ortholog prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Ortholog.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Ortholog prediction.
KO part of 4 pathways
Phenylalanine, tyrosine and tryptophan biosynthesis |
Metabolic pathways |
Biosynthesis of secondary metabolites |
Biosynthesis of amino acids |
KO part of 1 modules
M00022 | Aromatic amino acid metabolism | Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate |
Occurence in the database
K00891 is associated with 14 different proteins |
The 14 proteins are classified into 2 different orthogroup(s) |
Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
---|---|---|---|---|---|---|---|---|
0 | group_2070 | FBDBKF_15215 | 53798 | 54331 | 1 | aroL | shikimate kinase AroL | Morganella morganii S1 |
1 | group_2070 | EHELCC_11030 | 30575 | 31108 | -1 | aroL | shikimate kinase AroL | Morganella morganii S2 |
2 | group_2070 | NLDBIP_11375 | 30575 | 31108 | -1 | aroL | shikimate kinase AroL | Morganella morganii S4 |
3 | group_2070 | LHKJJB_11235 | 30575 | 31108 | -1 | aroL | shikimate kinase AroL | Morganella morganii S3 |
4 | group_2070 | HKOGLL_09845 | 30575 | 31108 | -1 | aroL | shikimate kinase AroL | Morganella morganii S5 |
5 | group_1643 | FBDBKF_10410 | 38510 | 39034 | 1 | aroK | shikimate kinase AroK | Morganella morganii S1 |
6 | group_1643 | EHELCC_14745 | 38500 | 39024 | 1 | aroK | shikimate kinase AroK | Morganella morganii S2 |
7 | group_1643 | NLDBIP_14575 | 38500 | 39024 | 1 | aroK | shikimate kinase AroK | Morganella morganii S4 |
8 | group_1643 | LHKJJB_14770 | 102702 | 103226 | -1 | aroK | shikimate kinase AroK | Morganella morganii S3 |
9 | group_1643 | HKOGLL_13390 | 102702 | 103226 | -1 | aroK | shikimate kinase AroK | Morganella morganii S5 |
10 | group_2070 | F4V73_RS12230 | 30050 | 30583 | -1 | aroL | shikimate kinase AroL | Morganella psychrotolerans |
11 | group_1643 | F4V73_RS14105 | 35206 | 35730 | 1 | aroK | shikimate kinase AroK | Morganella psychrotolerans |
12 | group_2070 | PMI_RS01775 | 420975 | 421487 | 1 | aroL | shikimate kinase AroL | Proteus mirabilis HI4320 |
13 | group_1643 | PMI_RS14970 | 3323307 | 3323828 | 1 | aroK | shikimate kinase AroK | Proteus mirabilis HI4320 |