COG5633


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5633, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YcfL
Function(s) descr. Function unknown (S)

Occurence in the database

COG5633 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3171 FBDBKF_00580 95677 96366 -1 Lipoprotein Morganella morganii S1
1 group_3171 EHELCC_00965 212502 213191 1 Lipoprotein Morganella morganii S2
2 group_3171 NLDBIP_02495 466945 467634 -1 Lipoprotein Morganella morganii S4
3 group_3171 LHKJJB_04010 74186 74875 -1 Lipoprotein Morganella morganii S3
4 group_3171 HKOGLL_03035 212707 213396 1 Lipoprotein Morganella morganii S5
5 group_4383 PMI_RS04270 958569 958970 1 YcfL family protein Proteus mirabilis HI4320
6 group_4753 PMI_RS19180 8583 8717 1 conjugal transfer protein Proteus mirabilis HI4320