COG5563


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5563, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein CPn0794, contains PKD-like HAF repeats
Function(s) descr. Function unknown (S)

Occurence in the database

COG5563 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_236 FBDBKF_01580 7490 9622 -1 Uncharacterized conserved protein CPn0794, contains PKD-like HAF repeats Morganella morganii S1
1 group_236 EHELCC_02050 395310 397442 -1 Uncharacterized conserved protein CPn0794, contains PKD-like HAF repeats Morganella morganii S2
2 group_236 NLDBIP_01410 282694 284826 1 Uncharacterized conserved protein CPn0794, contains PKD-like HAF repeats Morganella morganii S4
3 group_236 LHKJJB_00625 107859 109991 -1 Uncharacterized conserved protein CPn0794, contains PKD-like HAF repeats Morganella morganii S3
4 group_236 HKOGLL_00665 113370 115502 -1 Uncharacterized conserved protein CPn0794, contains PKD-like HAF repeats Morganella morganii S5
5 group_236 F4V73_RS01645 361043 363205 1 autotransporter domain-containing protein Morganella psychrotolerans
6 group_236 F4V73_RS18550 48328 50586 1 autotransporter domain-containing protein Morganella psychrotolerans
7 group_236 PMI_RS19665 2751939 2754803 1 autotransporter domain-containing protein Proteus mirabilis HI4320