COG5340


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5340, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Abortive phage infection protein AbiEi, antitoxin conponent of an AbiEi-AbiEii TA system
Function(s) descr. Defense mechanisms (V)

Occurence in the database

COG5340 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2200 FBDBKF_16785 35603 36127 1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system Morganella morganii S1
1 group_2200 EHELCC_10675 177644 178168 -1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system Morganella morganii S2
2 group_2200 NLDBIP_11020 155915 156439 -1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system Morganella morganii S4
3 group_2200 LHKJJB_10335 35089 35613 1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system Morganella morganii S3
4 group_2200 HKOGLL_16500 35098 35622 1 Transcriptional regulator, AbiEi antitoxin, Type IV TA system Morganella morganii S5
5 group_2200 PMI_RS11460 2524700 2525233 -1 hypothetical protein Proteus mirabilis HI4320
6 group_4578 PMI_RS12180 2693397 2694188 -1 type IV toxin-antitoxin system AbiEi family antitoxin Proteus mirabilis HI4320
7 group_2200 PMI_RS12315 2731174 2731710 1 DUF6088 family protein Proteus mirabilis HI4320