COG4890


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4890, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted outer membrane lipoprotein
Function(s) descr. Function unknown (S)

Occurence in the database

COG4890 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1514 FBDBKF_09790 51630 51737 -1 cydX cytochrome bd-I oxidase subunit CydX Morganella morganii S1
1 group_1514 EHELCC_04590 243595 243702 -1 cydX cytochrome bd-I oxidase subunit CydX Morganella morganii S2
2 group_1514 NLDBIP_04590 243391 243498 -1 cydX cytochrome bd-I oxidase subunit CydX Morganella morganii S4
3 group_1514 LHKJJB_14040 91880 91987 1 cydX cytochrome bd-I oxidase subunit CydX Morganella morganii S3
4 group_1514 HKOGLL_12495 52411 52518 -1 cydX cytochrome bd-I oxidase subunit CydX Morganella morganii S5
5 group_1514 F4V73_RS00555 120883 120990 1 cydX cytochrome bd-I oxidase subunit CydX Morganella psychrotolerans
6 group_1514 PMI_RS18845 624252 624365 1 cydX cytochrome bd-I oxidase subunit CydX Proteus mirabilis HI4320