COG4608
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4608, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description |
ABC-type oligopeptide transport system, ATPase component |
Function(s) descr. |
Amino acid transport and metabolism (E) |
Occurence in the database
COG4608 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 1 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_13 |
FBDBKF_05275 |
59753 |
60751 |
-1 |
oppF |
murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF |
Morganella morganii S1 |
1 |
group_13 |
FBDBKF_11970 |
42468 |
43466 |
-1 |
dppF |
dipeptide ABC transporter ATP-binding subunit DppF |
Morganella morganii S1 |
2 |
group_13 |
EHELCC_12315 |
120743 |
121741 |
1 |
oppF |
murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF |
Morganella morganii S2 |
3 |
group_13 |
EHELCC_14335 |
91239 |
92237 |
1 |
dppF |
dipeptide ABC transporter ATP-binding subunit DppF |
Morganella morganii S2 |
4 |
group_13 |
NLDBIP_12655 |
120698 |
121696 |
1 |
oppF |
murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF |
Morganella morganii S4 |
5 |
group_13 |
NLDBIP_15430 |
95176 |
96174 |
1 |
dppF |
dipeptide ABC transporter ATP-binding subunit DppF |
Morganella morganii S4 |
6 |
group_13 |
LHKJJB_12515 |
120743 |
121741 |
1 |
oppF |
murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF |
Morganella morganii S3 |
7 |
group_13 |
LHKJJB_15180 |
42468 |
43466 |
-1 |
dppF |
dipeptide ABC transporter ATP-binding subunit DppF |
Morganella morganii S3 |
8 |
group_13 |
HKOGLL_11130 |
120743 |
121741 |
1 |
oppF |
murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF |
Morganella morganii S5 |
9 |
group_13 |
HKOGLL_14300 |
29131 |
30129 |
-1 |
dppF |
dipeptide ABC transporter ATP-binding subunit DppF |
Morganella morganii S5 |
10 |
group_13 |
F4V73_RS05730 |
1216437 |
1217435 |
-1 |
oppF |
murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF |
Morganella psychrotolerans |
11 |
group_13 |
F4V73_RS14685 |
172914 |
173912 |
1 |
|
dipeptide ABC transporter ATP-binding subunit DppF |
Morganella psychrotolerans |
12 |
group_13 |
PMI_RS07120 |
1554709 |
1555716 |
-1 |
oppF |
murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF |
Proteus mirabilis HI4320 |
13 |
group_13 |
PMI_RS14045 |
3118432 |
3119433 |
-1 |
|
peptide ABC transporter ATP-binding protein |
Proteus mirabilis HI4320 |