COG4608


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4608, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type oligopeptide transport system, ATPase component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG4608 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_13 FBDBKF_05275 59753 60751 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S1
1 group_13 FBDBKF_11970 42468 43466 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S1
2 group_13 EHELCC_12315 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S2
3 group_13 EHELCC_14335 91239 92237 1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S2
4 group_13 NLDBIP_12655 120698 121696 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S4
5 group_13 NLDBIP_15430 95176 96174 1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S4
6 group_13 LHKJJB_12515 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S3
7 group_13 LHKJJB_15180 42468 43466 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S3
8 group_13 HKOGLL_11130 120743 121741 1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella morganii S5
9 group_13 HKOGLL_14300 29131 30129 -1 dppF dipeptide ABC transporter ATP-binding subunit DppF Morganella morganii S5
10 group_13 F4V73_RS05730 1216437 1217435 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Morganella psychrotolerans
11 group_13 F4V73_RS14685 172914 173912 1 dipeptide ABC transporter ATP-binding subunit DppF Morganella psychrotolerans
12 group_13 PMI_RS07120 1554709 1555716 -1 oppF murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF Proteus mirabilis HI4320
13 group_13 PMI_RS14045 3118432 3119433 -1 peptide ABC transporter ATP-binding protein Proteus mirabilis HI4320