COG4558


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4558, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type hemin transport system, periplasmic component
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG4558 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1792 FBDBKF_13305 39675 40505 1 chuT ABC-type hemin transport system, periplasmic component Morganella morganii S1
1 group_1792 EHELCC_08790 234686 235516 -1 chuT ABC-type hemin transport system, periplasmic component Morganella morganii S2
2 group_1792 NLDBIP_09115 234686 235516 -1 chuT ABC-type hemin transport system, periplasmic component Morganella morganii S4
3 group_1792 LHKJJB_05150 21643 22473 1 chuT ABC-type hemin transport system, periplasmic component Morganella morganii S3
4 group_1792 HKOGLL_05765 219277 220107 -1 chuT ABC-type hemin transport system, periplasmic component Morganella morganii S5
5 group_1792 F4V73_RS03450 734947 735774 -1 ABC transporter substrate-binding protein Morganella psychrotolerans
6 group_1792 PMI_RS06910 1512792 1513607 1 hemin ABC transporter substrate-binding protein Proteus mirabilis HI4320