COG4392


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4392, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Branched-chain amino acid transport protein
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG4392 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2578 FBDBKF_02835 262335 262646 1 azlD2 Branched-chain amino acid transport protein Morganella morganii S1
1 group_2578 EHELCC_03305 650155 650466 1 azlD2 Branched-chain amino acid transport protein Morganella morganii S2
2 group_2578 NLDBIP_00155 29670 29981 -1 azlD2 Branched-chain amino acid transport protein Morganella morganii S4
3 group_2578 LHKJJB_01880 362704 363015 1 azlD2 Branched-chain amino acid transport protein Morganella morganii S3
4 group_2578 HKOGLL_01920 368215 368526 1 azlD2 Branched-chain amino acid transport protein Morganella morganii S5
5 group_2578 F4V73_RS05275 1122324 1122635 1 AzlD domain-containing protein Morganella psychrotolerans