COG3961


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3961, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description TPP-dependent 2-oxoacid decarboxylase, includes indolepyruvate decarboxylase
Function(s) descr. Carbohydrate transport and metabolism (G)
Coenzyme transport and metabolism (H)
General function prediction only (R)

Occurence in the database

COG3961 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_262 FBDBKF_04725 147679 149328 1 pDC1 TPP-dependent 2-oxoacid decarboxylase, includes indolepyruvate decarboxylase Morganella morganii S1
1 group_262 EHELCC_06015 207136 208785 1 pDC1 TPP-dependent 2-oxoacid decarboxylase, includes indolepyruvate decarboxylase Morganella morganii S2
2 group_262 NLDBIP_06335 248201 249850 1 pDC1 TPP-dependent 2-oxoacid decarboxylase, includes indolepyruvate decarboxylase Morganella morganii S4
3 group_262 LHKJJB_03215 225725 227374 1 pDC1 TPP-dependent 2-oxoacid decarboxylase, includes indolepyruvate decarboxylase Morganella morganii S3
4 group_262 HKOGLL_06690 147589 149238 1 pDC1 TPP-dependent 2-oxoacid decarboxylase, includes indolepyruvate decarboxylase Morganella morganii S5
5 group_262 F4V73_RS09200 1926899 1928548 1 thiamine pyrophosphate-binding protein Morganella psychrotolerans
6 group_262 PMI_RS01075 266036 267673 1 thiamine pyrophosphate-binding protein Proteus mirabilis HI4320
7 group_262 PMI_RS04150 932540 934189 -1 thiamine pyrophosphate-binding protein Proteus mirabilis HI4320