COG3840


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3840, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type thiamine transport system, ATPase component ThiQ
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG3840 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1094 FBDBKF_06220 73583 74281 1 thiQ thiamine ABC transporter ATP-binding protein ThiQ Morganella morganii S1
1 group_1094 EHELCC_09265 74155 74853 1 thiQ thiamine ABC transporter ATP-binding protein ThiQ Morganella morganii S2
2 group_1094 NLDBIP_09645 74155 74853 1 thiQ thiamine ABC transporter ATP-binding protein ThiQ Morganella morganii S4
3 group_1094 LHKJJB_08110 142385 143083 -1 thiQ thiamine ABC transporter ATP-binding protein ThiQ Morganella morganii S3
4 group_1094 HKOGLL_07660 142385 143083 -1 thiQ thiamine ABC transporter ATP-binding protein ThiQ Morganella morganii S5
5 group_1094 F4V73_RS15695 139939 140637 -1 thiQ thiamine ABC transporter ATP-binding protein ThiQ Morganella psychrotolerans
6 group_1094 PMI_RS11495 2532905 2533606 1 thiQ thiamine ABC transporter ATP-binding protein ThiQ Proteus mirabilis HI4320