COG3560


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3560, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Fatty acid repression mutant protein (predicted oxidoreductase)
Function(s) descr. General function prediction only (R)

Occurence in the database

COG3560 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2270 FBDBKF_17450 24769 25371 1 fMR2 Fatty acid repression mutant protein (putative oxidoreductase) Morganella morganii S1
1 group_2270 EHELCC_17345 24769 25371 1 fMR2 Fatty acid repression mutant protein (putative oxidoreductase) Morganella morganii S2
2 group_2270 NLDBIP_17850 17425 18027 -1 fMR2 Fatty acid repression mutant protein (putative oxidoreductase) Morganella morganii S4
3 group_2270 LHKJJB_17770 17423 18025 -1 fMR2 Fatty acid repression mutant protein (putative oxidoreductase) Morganella morganii S3
4 group_2270 HKOGLL_17780 17423 18025 -1 fMR2 Fatty acid repression mutant protein (putative oxidoreductase) Morganella morganii S5
5 group_2270 F4V73_RS16625 148432 149034 1 nitroreductase family protein Morganella psychrotolerans
6 group_2270 PMI_RS00235 73039 73638 -1 nitroreductase family protein Proteus mirabilis HI4320