COG3112


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3112, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YacL, UPF0231 family
Function(s) descr. Function unknown (S)

Occurence in the database

COG3112 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_836 FBDBKF_04215 27397 27768 -1 yacL UPF0231 protein Morganella morganii S1
1 group_836 EHELCC_05505 86854 87225 -1 yacL UPF0231 protein Morganella morganii S2
2 group_836 NLDBIP_05825 127919 128290 -1 yacL UPF0231 protein Morganella morganii S4
3 group_836 LHKJJB_02705 105443 105814 -1 yacL UPF0231 protein Morganella morganii S3
4 group_836 HKOGLL_06180 27307 27678 -1 yacL UPF0231 protein Morganella morganii S5
5 group_836 F4V73_RS08660 1787216 1787581 -1 YacL family protein Morganella psychrotolerans
6 group_836 PMI_RS10055 2180690 2181061 -1 YacL family protein Proteus mirabilis HI4320