COG3100


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3100, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YcgL, UPF0745 family
Function(s) descr. Function unknown (S)

Occurence in the database

COG3100 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_655 FBDBKF_02250 140682 140966 1 ycgL UPF0745 protein Morganella morganii S1
1 group_655 EHELCC_02720 528502 528786 1 ycgL UPF0745 protein Morganella morganii S2
2 group_655 NLDBIP_00740 151350 151634 -1 ycgL UPF0745 protein Morganella morganii S4
3 group_655 LHKJJB_01295 241051 241335 1 ycgL UPF0745 protein Morganella morganii S3
4 group_655 HKOGLL_01335 246562 246846 1 ycgL UPF0745 protein Morganella morganii S5
5 group_655 F4V73_RS04620 977463 977750 1 YcgL domain-containing protein Morganella psychrotolerans
6 group_655 PMI_RS05650 1231862 1232149 1 YcgL domain-containing protein Proteus mirabilis HI4320