COG3081


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3081, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description dsDNA-binding nucleoid-associated protein YejK/NdpA
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG3081 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3283 FBDBKF_08890 159865 161013 1 Nucleoid-associated protein Morganella morganii S1
1 group_389 FBDBKF_14900 80721 81725 -1 yejK nucleoid-associated protein YejK Morganella morganii S1
2 group_3283 EHELCC_12635 2712 3860 -1 Nucleoid-associated protein Morganella morganii S2
3 group_389 EHELCC_15705 110797 111801 -1 yejK nucleoid-associated protein YejK Morganella morganii S2
4 group_3283 NLDBIP_12975 2712 3860 -1 Nucleoid-associated protein Morganella morganii S4
5 group_389 NLDBIP_16235 110797 111801 -1 yejK nucleoid-associated protein YejK Morganella morganii S4
6 group_3283 LHKJJB_13580 158583 159731 1 Nucleoid-associated protein Morganella morganii S3
7 group_389 LHKJJB_15605 4885 5889 1 yejK nucleoid-associated protein YejK Morganella morganii S3
8 group_3283 HKOGLL_11450 2712 3860 -1 Nucleoid-associated protein Morganella morganii S5
9 group_389 HKOGLL_14725 4097 5101 1 yejK nucleoid-associated protein YejK Morganella morganii S5
10 group_389 F4V73_RS07700 1610276 1611280 -1 yejK nucleoid-associated protein YejK Morganella psychrotolerans
11 group_389 PMI_RS04050 907108 908112 1 yejK nucleoid-associated protein YejK Proteus mirabilis HI4320
12 group_389 PMI_RS17310 3801982 3803076 1 nucleoid-associated protein Proteus mirabilis HI4320