COG3076


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3076, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Regulator of RNase E activity RraB
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG3076 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1427 FBDBKF_08820 143842 144249 1 rraB ribonuclease E inhibitor RraB Morganella morganii S1
1 group_1427 EHELCC_12705 19476 19883 -1 rraB ribonuclease E inhibitor RraB Morganella morganii S2
2 group_1427 NLDBIP_13045 19476 19883 -1 rraB ribonuclease E inhibitor RraB Morganella morganii S4
3 group_1427 LHKJJB_13510 142560 142967 1 rraB ribonuclease E inhibitor RraB Morganella morganii S3
4 group_1427 HKOGLL_11520 19476 19883 -1 rraB ribonuclease E inhibitor RraB Morganella morganii S5
5 group_1427 F4V73_RS10040 114422 114871 1 rraB ribonuclease E inhibitor RraB Morganella psychrotolerans
6 group_1427 PMI_RS17235 3784460 3784891 1 rraB ribonuclease E inhibitor RraB Proteus mirabilis HI4320