COG3047


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3047, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane protein OmpW
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3047 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_951 FBDBKF_05190 45480 46115 -1 ompW outer membrane protein OmpW Morganella morganii S1
1 group_951 EHELCC_12400 135379 136014 1 ompW outer membrane protein OmpW Morganella morganii S2
2 group_951 NLDBIP_12740 135334 135969 1 ompW outer membrane protein OmpW Morganella morganii S4
3 group_951 LHKJJB_12600 135379 136014 1 ompW outer membrane protein OmpW Morganella morganii S3
4 group_951 HKOGLL_11215 135379 136014 1 ompW outer membrane protein OmpW Morganella morganii S5
5 group_951 F4V73_RS05645 1200883 1201521 -1 ompW outer membrane protein OmpW Morganella psychrotolerans
6 group_951 PMI_RS06515 1429387 1430028 -1 ompW outer membrane protein OmpW Proteus mirabilis HI4320