COG3017


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3017, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane lipoprotein LolB, involved in outer membrane biogenesis
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3017 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_609 FBDBKF_01915 70248 70877 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S1
1 group_994 FBDBKF_05525 115243 115797 -1 Lipoprotein Morganella morganii S1
2 group_609 EHELCC_02385 458068 458697 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S2
3 group_994 EHELCC_12065 65697 66251 1 Lipoprotein Morganella morganii S2
4 group_609 NLDBIP_01075 221439 222068 1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S4
5 group_994 NLDBIP_12405 65652 66206 1 Lipoprotein Morganella morganii S4
6 group_609 LHKJJB_00960 170617 171246 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S3
7 group_994 LHKJJB_12265 65697 66251 1 Lipoprotein Morganella morganii S3
8 group_609 HKOGLL_01000 176128 176757 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella morganii S5
9 group_994 HKOGLL_10880 65697 66251 1 Lipoprotein Morganella morganii S5
10 group_609 F4V73_RS04260 900469 901098 -1 lolB lipoprotein insertase outer membrane protein LolB Morganella psychrotolerans
11 group_609 PMI_RS05255 1148377 1149015 -1 lolB lipoprotein insertase outer membrane protein LolB Proteus mirabilis HI4320