COG3012


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3012, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains
Function(s) descr. Function unknown (S)

Occurence in the database

COG3012 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_972 FBDBKF_05370 83422 83898 1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S1
1 group_972 EHELCC_12220 97596 98072 -1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S2
2 group_972 NLDBIP_12560 97551 98027 -1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S4
3 group_972 LHKJJB_12420 97596 98072 -1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S3
4 group_972 HKOGLL_11035 97596 98072 -1 ychJ Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains Morganella morganii S5
5 group_972 F4V73_RS05825 1240330 1240806 1 YchJ family protein Morganella psychrotolerans
6 group_972 PMI_RS07225 1582815 1583306 1 YchJ family protein Proteus mirabilis HI4320