COG3008


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3008, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Intermembrane transporter PqiABC subunit PqiB
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3008 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_294 FBDBKF_07310 146179 147828 1 pqiB intermembrane transport protein PqiB Morganella morganii S1
1 group_294 EHELCC_03660 38358 40007 -1 pqiB intermembrane transport protein PqiB Morganella morganii S2
2 group_294 NLDBIP_03660 38154 39803 -1 pqiB intermembrane transport protein PqiB Morganella morganii S4
3 group_294 LHKJJB_09490 38268 39917 -1 pqiB intermembrane transport protein PqiB Morganella morganii S3
4 group_294 HKOGLL_09485 151135 152784 1 pqiB intermembrane transport protein PqiB Morganella morganii S5
5 group_294 F4V73_RS01495 334622 336274 1 pqiB intermembrane transport protein PqiB Morganella psychrotolerans
6 group_294 PMI_RS03820 866305 867957 1 pqiB intermembrane transport protein PqiB Proteus mirabilis HI4320
7 group_294 PMI_RS04915 1073436 1075754 -1 MlaD family protein Proteus mirabilis HI4320