COG3004


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3004, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Na+/H+ antiporter NhaA
Function(s) descr. Energy production and conversion (C)
Inorganic ion transport and metabolism (P)

Occurence in the database

COG3004 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1134 FBDBKF_06470 133013 134191 -1 nhaA Na+/H+ antiporter NhaA Morganella morganii S1
1 group_1134 EHELCC_09515 133585 134763 -1 nhaA Na+/H+ antiporter NhaA Morganella morganii S2
2 group_1134 NLDBIP_09895 133585 134763 -1 nhaA Na+/H+ antiporter NhaA Morganella morganii S4
3 group_1134 LHKJJB_07860 82475 83653 1 nhaA Na+/H+ antiporter NhaA Morganella morganii S3
4 group_1134 HKOGLL_07410 82475 83653 1 nhaA Na+/H+ antiporter NhaA Morganella morganii S5
5 group_1134 F4V73_RS15455 79393 80571 1 nhaA Na+/H+ antiporter NhaA Morganella psychrotolerans
6 group_1134 PMI_RS00055 21812 22990 1 nhaA Na+/H+ antiporter NhaA Proteus mirabilis HI4320