COG2908


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2908, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description UDP-2,3-diacylglucosamine pyrophosphatase LpxH
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG2908 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_917 FBDBKF_04960 197474 198196 1 lpxH UDP-2,3-diacylglucosamine diphosphatase Morganella morganii S1
1 group_917 EHELCC_06250 256931 257653 1 lpxH UDP-2,3-diacylglucosamine diphosphatase Morganella morganii S2
2 group_917 NLDBIP_06570 297996 298718 1 lpxH UDP-2,3-diacylglucosamine diphosphatase Morganella morganii S4
3 group_917 LHKJJB_03450 275520 276242 1 lpxH UDP-2,3-diacylglucosamine diphosphatase Morganella morganii S3
4 group_917 HKOGLL_06925 197384 198106 1 lpxH UDP-2,3-diacylglucosamine diphosphatase Morganella morganii S5
5 group_917 F4V73_RS16100 22537 23259 1 UDP-2,3-diacylglucosamine diphosphatase Morganella psychrotolerans
6 group_917 PMI_RS10645 2340795 2341517 1 UDP-2,3-diacylglucosamine diphosphatase Proteus mirabilis HI4320