COG2901


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2901, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding protein Fis (factor for inversion stimulation)
Function(s) descr. Transcription (K)

Occurence in the database

COG2901 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_757 FBDBKF_03380 77904 78200 1 fis DNA-binding transcriptional regulator Fis Morganella morganii S1
1 group_757 EHELCC_07155 168903 169199 -1 fis DNA-binding transcriptional regulator Fis Morganella morganii S2
2 group_757 NLDBIP_07480 168776 169072 -1 fis DNA-binding transcriptional regulator Fis Morganella morganii S4
3 group_757 LHKJJB_07015 132522 132818 -1 fis DNA-binding transcriptional regulator Fis Morganella morganii S3
4 group_757 HKOGLL_03915 100569 100865 1 fis DNA-binding transcriptional regulator Fis Morganella morganii S5
5 group_757 F4V73_RS11550 460556 460852 -1 fis DNA-binding transcriptional regulator Fis Morganella psychrotolerans
6 group_757 PMI_RS18020 3959637 3959933 -1 fis DNA-binding transcriptional regulator Fis Proteus mirabilis HI4320