COG2453


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2453, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Protein-tyrosine phosphatase
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG2453 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2972 FBDBKF_16570 42750 44078 -1 cDC14 Protein-tyrosine phosphatase Morganella morganii S1
1 group_2972 EHELCC_08435 159736 161064 -1 cDC14 Protein-tyrosine phosphatase Morganella morganii S2
2 group_2972 NLDBIP_08760 159736 161064 -1 cDC14 Protein-tyrosine phosphatase Morganella morganii S4
3 group_2972 LHKJJB_05505 96095 97423 1 cDC14 Protein-tyrosine phosphatase Morganella morganii S3
4 group_2972 HKOGLL_05410 144327 145655 -1 cDC14 Protein-tyrosine phosphatase Morganella morganii S5
5 group_2972 F4V73_RS03100 662255 663595 -1 phosphatase PAP2/dual specificity phosphatase family protein Morganella psychrotolerans