COG2188


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2188, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA-binding transcriptional regulator, GntR family
Function(s) descr. Transcription (K)

Occurence in the database

COG2188 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2733 FBDBKF_07525 18616 19326 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S1
1 group_3289 FBDBKF_09170 63354 64091 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S1
2 group_3289 EHELCC_10240 82013 82750 1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S2
3 group_2733 EHELCC_17195 46266 46976 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S2
4 group_3289 NLDBIP_10585 60284 61021 1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S4
5 group_2733 NLDBIP_13800 13685 14395 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S4
6 group_2733 LHKJJB_09050 145354 146064 1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S3
7 group_3289 LHKJJB_10770 130507 131244 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S3
8 group_2733 HKOGLL_08600 145354 146064 1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S5
9 group_3289 HKOGLL_13830 63808 64545 -1 mngR DNA-binding transcriptional regulator, GntR family Morganella morganii S5
10 group_2733 F4V73_RS13590 350976 351686 1 UTRA domain-containing protein Morganella psychrotolerans