COG2008


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2008, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Threonine aldolase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG2008 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_675 FBDBKF_02460 186250 187275 1 gLY1 Threonine aldolase Morganella morganii S1
1 group_675 EHELCC_02930 574070 575095 1 gLY1 Threonine aldolase Morganella morganii S2
2 group_675 NLDBIP_00530 105041 106066 -1 gLY1 Threonine aldolase Morganella morganii S4
3 group_675 LHKJJB_01505 286619 287644 1 gLY1 Threonine aldolase Morganella morganii S3
4 group_675 HKOGLL_01545 292130 293155 1 gLY1 Threonine aldolase Morganella morganii S5
5 group_675 F4V73_RS04835 1027532 1028557 1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme Morganella psychrotolerans
6 group_675 PMI_RS06130 1344809 1345834 1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme Proteus mirabilis HI4320