COG2001


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2001, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description MraZ, DNA-binding transcriptional regulator and inhibitor of RsmH methyltransferase activity
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG2001 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_866 FBDBKF_04380 66106 66564 -1 mraZ division/cell wall cluster transcriptional repressor MraZ Morganella morganii S1
1 group_866 EHELCC_05670 125563 126021 -1 mraZ division/cell wall cluster transcriptional repressor MraZ Morganella morganii S2
2 group_866 NLDBIP_05990 166628 167086 -1 mraZ division/cell wall cluster transcriptional repressor MraZ Morganella morganii S4
3 group_866 LHKJJB_02870 144152 144610 -1 mraZ division/cell wall cluster transcriptional repressor MraZ Morganella morganii S3
4 group_866 HKOGLL_06345 66016 66474 -1 mraZ division/cell wall cluster transcriptional repressor MraZ Morganella morganii S5
5 group_866 F4V73_RS08825 1827235 1827693 -1 mraZ division/cell wall cluster transcriptional repressor MraZ Morganella psychrotolerans
6 group_866 PMI_RS10245 2243856 2244314 -1 mraZ division/cell wall cluster transcriptional repressor MraZ Proteus mirabilis HI4320