COG1979


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1979, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Alcohol dehydrogenase YqhD, Fe-dependent ADH family
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG1979 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_285 FBDBKF_06405 115863 117020 1 yqhD alcohol dehydrogenase Morganella morganii S1
1 group_285 EHELCC_09450 116435 117592 1 yqhD alcohol dehydrogenase Morganella morganii S2
2 group_285 NLDBIP_09830 116435 117592 1 yqhD alcohol dehydrogenase Morganella morganii S4
3 group_285 LHKJJB_07925 99646 100803 -1 yqhD alcohol dehydrogenase Morganella morganii S3
4 group_285 HKOGLL_07475 99646 100803 -1 yqhD alcohol dehydrogenase Morganella morganii S5
5 group_285 F4V73_RS07320 1527766 1528983 -1 iron-containing alcohol dehydrogenase Morganella psychrotolerans
6 group_285 F4V73_RS15520 96960 98117 -1 yqhD alcohol dehydrogenase Morganella psychrotolerans
7 group_285 PMI_RS00120 45473 46630 -1 iron-containing alcohol dehydrogenase Proteus mirabilis HI4320