COG1952


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1952, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Preprotein translocase subunit SecB
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG1952 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2172 FBDBKF_16340 56169 56642 1 secB protein-export chaperone SecB Morganella morganii S1
1 group_2172 EHELCC_16375 56169 56642 1 secB protein-export chaperone SecB Morganella morganii S2
2 group_2172 NLDBIP_16965 5528 6001 -1 secB protein-export chaperone SecB Morganella morganii S4
3 group_2172 LHKJJB_16885 8630 9103 -1 secB protein-export chaperone SecB Morganella morganii S3
4 group_2172 HKOGLL_16955 56169 56642 1 secB protein-export chaperone SecB Morganella morganii S5
5 group_2172 F4V73_RS17240 79635 80114 -1 secB protein-export chaperone SecB Morganella psychrotolerans
6 group_2172 PMI_RS15740 3497351 3497824 1 secB protein-export chaperone SecB Proteus mirabilis HI4320