COG1862


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1862, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Protein translocase subunit YajC
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG1862 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2260 FBDBKF_17400 11225 11560 -1 yajC preprotein translocase subunit YajC Morganella morganii S1
1 group_2260 EHELCC_17295 11225 11560 -1 yajC preprotein translocase subunit YajC Morganella morganii S2
2 group_2260 NLDBIP_17900 31236 31571 1 yajC preprotein translocase subunit YajC Morganella morganii S4
3 group_2260 LHKJJB_17820 31234 31569 1 yajC preprotein translocase subunit YajC Morganella morganii S3
4 group_2260 HKOGLL_17830 31234 31569 1 yajC preprotein translocase subunit YajC Morganella morganii S5
5 group_2260 F4V73_RS16575 134926 135261 -1 yajC preprotein translocase subunit YajC Morganella psychrotolerans
6 group_2260 PMI_RS00370 105594 105929 1 yajC preprotein translocase subunit YajC Proteus mirabilis HI4320