COG1823


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1823, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description L-cystine transporter TcyP, sodium:dicarboxylate symporter family
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1823 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_368 FBDBKF_13485 74689 76083 1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S1
1 group_368 EHELCC_08610 199108 200502 -1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S2
2 group_368 NLDBIP_08935 199108 200502 -1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S4
3 group_368 LHKJJB_05330 56657 58051 1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S3
4 group_368 HKOGLL_05585 183699 185093 -1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S5
5 group_368 F4V73_RS03280 699687 701081 -1 L-cystine transporter Morganella psychrotolerans
6 group_368 PMI_RS04950 1084435 1085826 -1 L-cystine transporter Proteus mirabilis HI4320