COG1666


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1666, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Cyclic di-GMP-binding protein YajQ, UPF0234 family
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG1666 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2099 FBDBKF_15810 11994 12485 1 yajQ YajQ family cyclic di-GMP-binding protein Morganella morganii S1
1 group_2099 EHELCC_19640 204 695 -1 yajQ YajQ family cyclic di-GMP-binding protein Morganella morganii S2
2 group_2099 NLDBIP_19635 3997 4488 1 yajQ YajQ family cyclic di-GMP-binding protein Morganella morganii S4
3 group_2099 LHKJJB_19585 204 695 -1 yajQ YajQ family cyclic di-GMP-binding protein Morganella morganii S3
4 group_2099 HKOGLL_19515 3997 4488 1 yajQ YajQ family cyclic di-GMP-binding protein Morganella morganii S5
5 group_2099 F4V73_RS16500 119190 119681 -1 YajQ family cyclic di-GMP-binding protein Morganella psychrotolerans
6 group_2099 PMI_RS00490 128357 128848 1 YajQ family cyclic di-GMP-binding protein Proteus mirabilis HI4320