COG1643


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1643, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description HrpA-like RNA helicase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1643 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_664 FBDBKF_02365 162564 166535 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S1
1 group_1311 FBDBKF_08030 138014 140464 1 hrpB ATP-dependent helicase HrpB Morganella morganii S1
2 group_664 EHELCC_02835 550384 554355 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S2
3 group_1311 EHELCC_13860 112208 114658 1 hrpB ATP-dependent helicase HrpB Morganella morganii S2
4 group_664 NLDBIP_00625 125781 129752 -1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S4
5 group_1311 NLDBIP_14305 133083 135533 1 hrpB ATP-dependent helicase HrpB Morganella morganii S4
6 group_664 LHKJJB_01410 262933 266904 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S3
7 group_1311 LHKJJB_08545 24216 26666 -1 hrpB ATP-dependent helicase HrpB Morganella morganii S3
8 group_664 HKOGLL_01450 268444 272415 1 hrpA ATP-dependent RNA helicase HrpA Morganella morganii S5
9 group_1311 HKOGLL_08095 24216 26666 -1 hrpB ATP-dependent helicase HrpB Morganella morganii S5
10 group_664 F4V73_RS04745 1001257 1005150 1 hrpA ATP-dependent RNA helicase HrpA Morganella psychrotolerans
11 group_1311 F4V73_RS12960 203262 205712 -1 hrpB ATP-dependent helicase HrpB Morganella psychrotolerans
12 group_1311 PMI_RS00975 237537 239966 1 hrpB ATP-dependent helicase HrpB Proteus mirabilis HI4320
13 group_664 PMI_RS05750 1252744 1256640 1 hrpA ATP-dependent RNA helicase HrpA Proteus mirabilis HI4320