COG1620


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1620, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description L-lactate permease
Function(s) descr. Energy production and conversion (C)

Occurence in the database

COG1620 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1844 FBDBKF_13765 45303 46883 1 lldP L-lactate permease Morganella morganii S1
1 group_1844 EHELCC_11435 130179 131759 1 lldP L-lactate permease Morganella morganii S2
2 group_1844 NLDBIP_11780 130179 131759 1 lldP L-lactate permease Morganella morganii S4
3 group_1844 LHKJJB_11640 130179 131759 1 lldP L-lactate permease Morganella morganii S3
4 group_1844 HKOGLL_10250 130179 131759 1 lldP L-lactate permease Morganella morganii S5
5 group_1844 F4V73_RS12635 123294 124910 1 L-lactate permease Morganella psychrotolerans
6 group_1844 PMI_RS09535 2081254 2082780 1 L-lactate permease Proteus mirabilis HI4320