COG1381


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1381, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Recombinational DNA repair protein RecO (RecF pathway)
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG1381 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_557 FBDBKF_01405 274419 275177 -1 recO DNA repair protein RecO Morganella morganii S1
1 group_557 EHELCC_00140 33691 34449 1 recO DNA repair protein RecO Morganella morganii S2
2 group_557 NLDBIP_03320 645687 646445 -1 recO DNA repair protein RecO Morganella morganii S4
3 group_557 LHKJJB_04835 252928 253686 -1 recO DNA repair protein RecO Morganella morganii S3
4 group_557 HKOGLL_02210 33896 34654 1 recO DNA repair protein RecO Morganella morganii S5
5 group_557 F4V73_RS01990 433356 434114 1 recO DNA repair protein RecO Morganella psychrotolerans
6 group_557 PMI_RS09310 2032820 2033560 -1 recO DNA repair protein RecO Proteus mirabilis HI4320