COG1349
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1349, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 27 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family |
---|---|
Function(s) descr. | Transcription (K) Carbohydrate transport and metabolism (G) |
Occurence in the database
COG1349 is associated with 27 different proteins (see tab "Protein list" and "Profile") |
The 27 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_263 | FBDBKF_04745 | 151171 | 151980 | -1 | glpR | DeoR family transcriptional regulator | Morganella morganii S1 |
1 | group_1620 | FBDBKF_10685 | 105539 | 106297 | -1 | glpR | DeoR/GlpR family transcriptional regulator | Morganella morganii S1 |
2 | group_2909 | FBDBKF_13575 | 92680 | 93450 | -1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S1 |
3 | group_2921 | FBDBKF_13790 | 51865 | 52620 | 1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S1 |
4 | group_263 | EHELCC_06035 | 210628 | 211437 | -1 | glpR | DeoR family transcriptional regulator | Morganella morganii S2 |
5 | group_2909 | EHELCC_08520 | 181741 | 182511 | 1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S2 |
6 | group_2921 | EHELCC_11460 | 136741 | 137496 | 1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S2 |
7 | group_1620 | EHELCC_15020 | 105529 | 106287 | -1 | glpR | DeoR/GlpR family transcriptional regulator | Morganella morganii S2 |
8 | group_263 | NLDBIP_06355 | 251693 | 252502 | -1 | glpR | DeoR family transcriptional regulator | Morganella morganii S4 |
9 | group_2909 | NLDBIP_08845 | 181741 | 182511 | 1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S4 |
10 | group_2921 | NLDBIP_11805 | 136741 | 137496 | 1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S4 |
11 | group_1620 | NLDBIP_14850 | 105529 | 106287 | -1 | glpR | DeoR/GlpR family transcriptional regulator | Morganella morganii S4 |
12 | group_263 | LHKJJB_03235 | 229217 | 230026 | -1 | glpR | DeoR family transcriptional regulator | Morganella morganii S3 |
13 | group_2909 | LHKJJB_05420 | 74648 | 75418 | -1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S3 |
14 | group_2921 | LHKJJB_11665 | 136741 | 137496 | 1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S3 |
15 | group_1620 | LHKJJB_14495 | 35439 | 36197 | 1 | glpR | DeoR/GlpR family transcriptional regulator | Morganella morganii S3 |
16 | group_2909 | HKOGLL_05495 | 166332 | 167102 | 1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S5 |
17 | group_263 | HKOGLL_06710 | 151081 | 151890 | -1 | glpR | DeoR family transcriptional regulator | Morganella morganii S5 |
18 | group_2921 | HKOGLL_10275 | 136741 | 137496 | 1 | glpR | DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family | Morganella morganii S5 |
19 | group_1620 | HKOGLL_13115 | 35439 | 36197 | 1 | glpR | DeoR/GlpR family transcriptional regulator | Morganella morganii S5 |
20 | group_2909 | F4V73_RS03190 | 680830 | 681600 | 1 | DeoR/GlpR family DNA-binding transcription regulator | Morganella psychrotolerans | |
21 | group_263 | F4V73_RS09215 | 1930799 | 1931608 | -1 | DeoR family transcriptional regulator | Morganella psychrotolerans | |
22 | group_2921 | F4V73_RS12660 | 130010 | 130897 | 1 | DeoR/GlpR family DNA-binding transcription regulator | Morganella psychrotolerans | |
23 | group_1620 | F4V73_RS14400 | 108752 | 109513 | -1 | DeoR/GlpR family transcriptional regulator | Morganella psychrotolerans | |
24 | group_263 | PMI_RS10550 | 2320179 | 2320958 | -1 | agaR | transcriptional repressor AgaR | Proteus mirabilis HI4320 |
25 | group_1620 | PMI_RS14480 | 3210629 | 3211387 | 1 | DeoR/GlpR family transcriptional regulator | Proteus mirabilis HI4320 | |
26 | group_263 | PMI_RS17455 | 3831482 | 3832258 | -1 | DeoR family transcriptional regulator | Proteus mirabilis HI4320 |