COG1338


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1338, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Flagellar biosynthesis protein FliP
Function(s) descr. Cell motility (N)

Occurence in the database

COG1338 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_460 FBDBKF_00640 106303 107043 1 fliP flagellar type III secretion system pore protein FliP Morganella morganii S1
1 group_460 EHELCC_00905 201825 202565 -1 fliP flagellar type III secretion system pore protein FliP Morganella morganii S2
2 group_460 NLDBIP_02555 477571 478311 1 fliP flagellar type III secretion system pore protein FliP Morganella morganii S4
3 group_460 LHKJJB_04070 84812 85552 1 fliP flagellar type III secretion system pore protein FliP Morganella morganii S3
4 group_460 HKOGLL_02975 202030 202770 -1 fliP flagellar type III secretion system pore protein FliP Morganella morganii S5
5 group_460 F4V73_RS06650 1383204 1383947 1 fliP flagellar type III secretion system pore protein FliP Morganella psychrotolerans
6 group_460 PMI_RS08010 1752495 1753265 1 fliP flagellar type III secretion system pore protein FliP Proteus mirabilis HI4320