COG1219


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1219, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ATP-dependent protease Clp, ATPase subunit ClpX
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG1219 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2112 FBDBKF_15875 25389 26669 1 clpX ATP-dependent protease ATP-binding subunit ClpX Morganella morganii S1
1 group_2112 EHELCC_18475 12828 14108 1 clpX ATP-dependent protease ATP-binding subunit ClpX Morganella morganii S2
2 group_2112 NLDBIP_17310 12828 14108 1 clpX ATP-dependent protease ATP-binding subunit ClpX Morganella morganii S4
3 group_2112 LHKJJB_17350 42080 43360 -1 clpX ATP-dependent protease ATP-binding subunit ClpX Morganella morganii S3
4 group_2112 HKOGLL_17045 12828 14108 1 clpX ATP-dependent protease ATP-binding subunit ClpX Morganella morganii S5
5 group_2112 F4V73_RS16435 104962 106242 -1 clpX ATP-dependent protease ATP-binding subunit ClpX Morganella psychrotolerans
6 group_2112 PMI_RS00560 143771 145042 1 clpX ATP-dependent protease ATP-binding subunit ClpX Proteus mirabilis HI4320