COG1217


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1217, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted membrane GTPase TypA/BipA involved in stress response
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG1217 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1733 FBDBKF_12095 72044 73864 -1 typA ribosome-dependent GTPase TypA Morganella morganii S1
1 group_1733 EHELCC_14210 60841 62661 1 typA ribosome-dependent GTPase TypA Morganella morganii S2
2 group_1733 NLDBIP_15305 64778 66598 1 typA ribosome-dependent GTPase TypA Morganella morganii S4
3 group_1733 LHKJJB_15305 72044 73864 -1 typA ribosome-dependent GTPase TypA Morganella morganii S3
4 group_1733 HKOGLL_14425 58707 60527 -1 typA ribosome-dependent GTPase TypA Morganella morganii S5
5 group_1733 F4V73_RS14550 140366 142186 1 typA translational GTPase TypA Morganella psychrotolerans
6 group_1733 PMI_RS14240 3158166 3160001 -1 typA ribosome-dependent GTPase TypA Proteus mirabilis HI4320