COG1214


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1214, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA A37 threonylcarbamoyladenosine modification protein TsaB
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1214 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_650 FBDBKF_02215 133962 134663 1 tsaB tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB Morganella morganii S1
1 group_650 EHELCC_02685 521782 522483 1 tsaB tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB Morganella morganii S2
2 group_650 NLDBIP_00775 157653 158354 -1 tsaB tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB Morganella morganii S4
3 group_650 LHKJJB_01260 234331 235032 1 tsaB tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB Morganella morganii S3
4 group_650 HKOGLL_01300 239842 240543 1 tsaB tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB Morganella morganii S5
5 group_650 F4V73_RS04585 970683 971384 1 tsaB tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB Morganella psychrotolerans
6 group_650 PMI_RS05615 1225051 1225752 1 tsaB tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB Proteus mirabilis HI4320