COG1197


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1197, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Transcription-repair coupling factor (superfamily II helicase)
Function(s) descr. Replication, recombination and repair (L)
Transcription (K)

Occurence in the database

COG1197 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1949 FBDBKF_14635 23703 27143 1 mfd transcription-repair coupling factor Morganella morganii S1
1 group_1949 EHELCC_15440 53779 57219 1 mfd transcription-repair coupling factor Morganella morganii S2
2 group_1949 NLDBIP_15970 53779 57219 1 mfd transcription-repair coupling factor Morganella morganii S4
3 group_1949 LHKJJB_15870 59467 62907 -1 mfd transcription-repair coupling factor Morganella morganii S3
4 group_1949 HKOGLL_14990 58679 62119 -1 mfd transcription-repair coupling factor Morganella morganii S5
5 group_1949 F4V73_RS07430 1552073 1555513 1 mfd transcription-repair coupling factor Morganella psychrotolerans
6 group_1949 PMI_RS04305 965251 968706 -1 mfd transcription-repair coupling factor Proteus mirabilis HI4320