COG1179


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1179, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA A37 threonylcarbamoyladenosine dehydratase
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG1179 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1078 FBDBKF_06115 46167 46985 -1 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA Morganella morganii S1
1 group_1078 EHELCC_09160 46739 47557 -1 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA Morganella morganii S2
2 group_1078 NLDBIP_09540 46739 47557 -1 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA Morganella morganii S4
3 group_1078 LHKJJB_08215 169681 170499 1 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA Morganella morganii S3
4 group_1078 HKOGLL_07765 169681 170499 1 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA Morganella morganii S5
5 group_1078 F4V73_RS15800 167405 168220 1 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA Morganella psychrotolerans
6 group_1078 PMI_RS11380 2504070 2504918 -1 tcdA tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA Proteus mirabilis HI4320