COG1137


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1137, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type lipopolysaccharide export system, ATPase component
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG1137 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_734 FBDBKF_03245 49901 50626 1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S1
1 group_734 EHELCC_07290 196477 197202 -1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S2
2 group_734 NLDBIP_07615 196350 197075 -1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S4
3 group_734 LHKJJB_07150 160096 160821 -1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S3
4 group_734 HKOGLL_03780 72566 73291 1 lptB LPS export ABC transporter ATP-binding protein Morganella morganii S5
5 group_734 F4V73_RS11675 486020 486745 -1 lptB LPS export ABC transporter ATP-binding protein Morganella psychrotolerans
6 group_734 PMI_RS18155 3986821 3987546 -1 lptB LPS export ABC transporter ATP-binding protein Proteus mirabilis HI4320